IL_6NDK_188

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_188 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1249

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6NDK|1|XA|G|450
6NDK|1|XA|A|451
6NDK|1|XA|A|452
6NDK|1|XA|A|453
6NDK|1|XA|C|454
6NDK|1|XA|C|455
*
6NDK|1|XA|G|476
6NDK|1|XA|A|477
6NDK|1|XA|C|479
6NDK|1|XA|U|480
6NDK|1|XA|G|481
6NDK|1|XA|A|482
6NDK|1|XA|C|483

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16