IL_6NDK_203

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_203 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.1331

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6NDK|1|XA|G|887
6NDK|1|XA|G|888
6NDK|1|XA|A|889
6NDK|1|XA|G|890
6NDK|1|XA|U|891
6NDK|1|XA|A|892
6NDK|1|XA|C|893
6NDK|1|XA|G|894
*
6NDK|1|XA|U|905
6NDK|1|XA|G|906
6NDK|1|XA|A|907
6NDK|1|XA|A|908
6NDK|1|XA|A|909
6NDK|1|XA|C|910

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17