IL_6NDK_206

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

6NDK|1|XA|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_206 not in the Motif Atlas

Homologous match to IL_4LFB_037

Geometric discrepancy: 0.2043

The information below is about IL_4LFB_037

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6NDK|1|XA|G|933
6NDK|1|XA|C|934
6NDK|1|XA|A|935
*
6NDK|1|XA|U|1380
6NDK|1|XA|U|1381
6NDK|1|XA|C|1382
6NDK|1|XA|C|1383
6NDK|1|XA|C|1384

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XG

30S ribosomal protein S7

Chain XI

30S ribosomal protein S9

Chain XV

Transfer RNA; tRNA