3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GG*CAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_207 not in the Motif Atlas
Homologous match to IL_4LFB_038
Geometric discrepancy: 0.1409
The information below is about IL_4LFB_038
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

6NDK|1|XA|G|953
6NDK|1|XA|G|954
*
6NDK|1|XA|C|1226
6NDK|1|XA|A|1227
6NDK|1|XA|C|1228

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XM
30S ribosomal protein S13
Chain XS
30S ribosomal protein S19
Chain XV
Transfer RNA; tRNA
Chain XY
A-site ASLSufA6 A37.5

Coloring options:


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