IL_6NDK_212

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GG*UCAGC

Length

7 nucleotides

Bulged bases

6NDK|1|XA|C|1200, 6NDK|1|XA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_212 not in the Motif Atlas

Homologous match to IL_4LFB_045

Geometric discrepancy: 0.1649

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6NDK|1|XA|G|1057
6NDK|1|XA|G|1058
*
6NDK|1|XA|U|1199
6NDK|1|XA|C|1200
6NDK|1|XA|A|1201
6NDK|1|XA|G|1202
6NDK|1|XA|C|1203

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XJ

30S ribosomal protein S10

Chain XN

30S ribosomal protein S14 type Z

Chain XY

A-site ASLSufA6 A37.5