IL_6NDK_221

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_221 not in the Motif Atlas

Geometric match to IL_4LFB_054

Geometric discrepancy: 0.2027

The information below is about IL_4LFB_054

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6NDK|1|XA|C|1260
6NDK|1|XA|A|1261
6NDK|1|XA|C|1262
*
6NDK|1|XA|G|1273
6NDK|1|XA|G|1274

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XS

30S ribosomal protein S19

Chain XU

30S ribosomal protein Thx