IL_6NDK_223

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

C(5MC)G*CAAG

Length

7 nucleotides

Bulged bases

6NDK|1|XA|A|1503

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_223 not in the Motif Atlas

Geometric match to IL_4V88_463

Geometric discrepancy: 0.1667

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

6NDK|1|XA|C|1399
6NDK|1|XA|5MC|1400
6NDK|1|XA|G|1401
*
6NDK|1|XA|C|1501
6NDK|1|XA|A|1502
6NDK|1|XA|A|1503
6NDK|1|XA|G|1504

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XV

Transfer RNA; tRNA

Chain XX

mRNA