IL_6NDK_228

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAAG*CGAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_228 not in the Motif Atlas

Homologous match to IL_6CZR_170

Geometric discrepancy: 0.1585

The information below is about IL_6CZR_170

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

6NDK|1|XA|C|1431
6NDK|1|XA|G|1432
6NDK|1|XA|A|1433
6NDK|1|XA|A|1434
6NDK|1|XA|G|1435
*
6NDK|1|XA|C|1466
6NDK|1|XA|G|1467
6NDK|1|XA|A|1468
6NDK|1|XA|G|1469

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YT

50S ribosomal protein L19