IL_6NDK_240

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGGACAC*GUG

Length

10 nucleotides

Bulged bases

6NDK|1|YA|C|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_240 not in the Motif Atlas

Homologous match to IL_8VTW_009

Geometric discrepancy: 0.3037

The information below is about IL_8VTW_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45612.4

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

14

Unit IDs

6NDK|1|YA|C|273|||K
6NDK|1|YA|G|274
6NDK|1|YA|G|275
6NDK|1|YA|A|276
6NDK|1|YA|C|277
6NDK|1|YA|A|278
6NDK|1|YA|C|279
*
6NDK|1|YA|G|361
6NDK|1|YA|U|362
6NDK|1|YA|G|363|||A

Current chains

Chain YA

23S rRNA

Nearby chains