3D structure

PDB id
6NDK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of ASLSufA6 A37.5 bound to the 70S A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.64 Å

Loop

Sequence
GCAAU*AGC
Length
8 nucleotides
Bulged bases
6NDK|1|YA|G|1332
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NDK_281 not in the Motif Atlas
Homologous match to IL_7RQB_051
Geometric discrepancy: 0.1674
The information below is about IL_7RQB_051
Detailed Annotation
C-loop
Broad Annotation
No text annotation
Motif group
IL_63596.6
Basepair signature
cWW-cWS-cSH-tWH-cWW-L
Number of instances in this motif group
14

Unit IDs

6NDK|1|YA|G|1319
6NDK|1|YA|C|1320
6NDK|1|YA|A|1321
6NDK|1|YA|A|1322
6NDK|1|YA|U|1323
*
6NDK|1|YA|A|1331
6NDK|1|YA|G|1332
6NDK|1|YA|C|1333

Current chains

Chain YA
23S rRNA

Nearby chains

Chain YW
50S ribosomal protein L22
Chain YX
50S ribosomal protein L23

Coloring options:


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