IL_6NDK_285

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

6NDK|1|YA|U|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_285 not in the Motif Atlas

Homologous match to IL_7RQB_055

Geometric discrepancy: 0.1554

The information below is about IL_7RQB_055

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

20

Unit IDs

6NDK|1|YA|C|1417
6NDK|1|YA|G|1418
6NDK|1|YA|A|1419
6NDK|1|YA|U|1420
6NDK|1|YA|G|1421
*
6NDK|1|YA|C|1577
6NDK|1|YA|U|1578
6NDK|1|YA|A|1579
6NDK|1|YA|A|1580
6NDK|1|YA|G|1581

Current chains

Chain YA

23S rRNA

Nearby chains