IL_6NDK_287

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUAG*CGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_287 not in the Motif Atlas

Homologous match to IL_7RQB_057

Geometric discrepancy: 0.2325

The information below is about IL_7RQB_057

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_04059.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6NDK|1|YA|C|1437
6NDK|1|YA|U|1438
6NDK|1|YA|A|1439
6NDK|1|YA|G|1440
*
6NDK|1|YA|C|1551
6NDK|1|YA|G|1552
6NDK|1|YA|A|1553
6NDK|1|YA|A|1554
6NDK|1|YA|G|1555

Current chains

Chain YA

23S rRNA

Nearby chains