IL_6NDK_311

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CAG*CGGG

Length

7 nucleotides

Bulged bases

6NDK|1|YA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_311 not in the Motif Atlas

Homologous match to IL_7RQB_082

Geometric discrepancy: 0.17

The information below is about IL_7RQB_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.7

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

15

Unit IDs

6NDK|1|YA|C|2081
6NDK|1|YA|A|2082
6NDK|1|YA|G|2083
*
6NDK|1|YA|C|2236
6NDK|1|YA|G|2237
6NDK|1|YA|G|2238
6NDK|1|YA|G|2239

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y1

50S ribosomal protein L28

Chain YD

50S ribosomal protein L2