IL_6NDK_316

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

6NDK|1|YA|G|2131, 6NDK|1|YA|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_316 not in the Motif Atlas

Homologous match to IL_7RQB_087

Geometric discrepancy: 0.4267

The information below is about IL_7RQB_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6NDK|1|YA|C|2129
6NDK|1|YA|U|2130
6NDK|1|YA|G|2131
6NDK|1|YA|U|2132
6NDK|1|YA|G|2133
6NDK|1|YA|A|2134
6NDK|1|YA|A|2135
6NDK|1|YA|C|2136
*
6NDK|1|YA|G|2155
6NDK|1|YA|G|2156
6NDK|1|YA|G|2157
6NDK|1|YA|A|2158
6NDK|1|YA|G|2159

Current chains

Chain YA

23S rRNA

Nearby chains