IL_6NDK_349

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

GGAAU*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_349 not in the Motif Atlas

Homologous match to IL_4LFB_065

Geometric discrepancy: 0.1477

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6NDK|1|QA|G|673
6NDK|1|QA|G|674
6NDK|1|QA|A|675
6NDK|1|QA|A|676
6NDK|1|QA|U|677
*
6NDK|1|QA|G|713
6NDK|1|QA|G|714
6NDK|1|QA|A|715
6NDK|1|QA|A|716
6NDK|1|QA|C|717

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QK

30S ribosomal protein S11

Chain QR

30S ribosomal protein S18

Chain RD

50S ribosomal protein L2