IL_6NDK_360

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UCGC*GCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_360 not in the Motif Atlas

Homologous match to IL_5J7L_327

Geometric discrepancy: 0.3777

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6NDK|1|RA|U|2102
6NDK|1|RA|C|2103
6NDK|1|RA|G|2104
6NDK|1|RA|C|2105
*
6NDK|1|RA|G|2184
6NDK|1|RA|C|2185
6NDK|1|RA|G|2186
6NDK|1|RA|G|2187

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RI

50S ribosomal protein L9