IL_6NDK_365
3D structure
- PDB id
- 6NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of ASLSufA6 A37.5 bound to the 70S A site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.64 Å
Loop
- Sequence
- CGG*CCAG
- Length
- 7 nucleotides
- Bulged bases
- 6NDK|1|RB|A|66
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6NDK_365 not in the Motif Atlas
- Homologous match to IL_7A0S_112
- Geometric discrepancy: 0.3479
- The information below is about IL_7A0S_112
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
6NDK|1|RB|C|17
6NDK|1|RB|G|18
6NDK|1|RB|G|19
*
6NDK|1|RB|C|64
6NDK|1|RB|C|65
6NDK|1|RB|A|66
6NDK|1|RB|G|67
Current chains
- Chain RB
- 5S rRNA
Nearby chains
- Chain RA
- Large subunit ribosomal RNA; LSU rRNA
- Chain RG
- 50S ribosomal protein L5
- Chain RS
- 50S ribosomal protein L18
- Chain RZ
- 50S ribosomal protein L25
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