IL_6NDK_383

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

UGC*GUGAA

Length

8 nucleotides

Bulged bases

6NDK|1|YA|G|1899, 6NDK|1|YA|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_383 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2364

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6NDK|1|YA|U|1841
6NDK|1|YA|G|1842
6NDK|1|YA|C|1843
*
6NDK|1|YA|G|1897
6NDK|1|YA|U|1898
6NDK|1|YA|G|1899
6NDK|1|YA|A|1900
6NDK|1|YA|A|1901

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2