IL_6NDK_388

3D structure

PDB id

6NDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of ASLSufA6 A37.5 bound to the 70S A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.64 Å

Loop

Sequence

CGC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NDK_388 not in the Motif Atlas

Geometric match to IL_7MLW_006

Geometric discrepancy: 0.3879

The information below is about IL_7MLW_006

Detailed Annotation

Isolated tWW contact

Broad Annotation

Isolated tWW contact

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

6NDK|1|RA|C|2103
6NDK|1|RA|G|2104
6NDK|1|RA|C|2105
*
6NDK|1|RA|G|2184
6NDK|1|RA|C|2185
6NDK|1|RA|G|2186

Current chains

Chain RA

23S rRNA

Nearby chains