IL_6NQB_011

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6NQB|1|A|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_011 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2506

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6NQB|1|A|G|147
6NQB|1|A|G|148
6NQB|1|A|A|149
6NQB|1|A|U|150
6NQB|1|A|A|151
6NQB|1|A|A|152
6NQB|1|A|C|153
*
6NQB|1|A|G|168
6NQB|1|A|C|169
6NQB|1|A|U|170
6NQB|1|A|A|171
6NQB|1|A|A|172
6NQB|1|A|U|173
6NQB|1|A|A|174
6NQB|1|A|C|175

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain T

30S ribosomal protein S20