IL_6NQB_034

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

6NQB|1|A|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_034 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.3452

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

6NQB|1|A|G|933
6NQB|1|A|C|934
6NQB|1|A|A|935
6NQB|1|A|C|936
*
6NQB|1|A|G|1379
6NQB|1|A|U|1380
6NQB|1|A|U|1381
6NQB|1|A|C|1382
6NQB|1|A|C|1383
6NQB|1|A|C|1384

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains