IL_6NQB_063

3D structure

PDB id

6NQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Role of Era in Assembly and Homeostasis of the Ribosomal Small Subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NQB_063 not in the Motif Atlas

Geometric match to IL_4AOB_005

Geometric discrepancy: 0.2993

The information below is about IL_4AOB_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6NQB|1|A|G|987
6NQB|1|A|G|988
6NQB|1|A|U|989
*
6NQB|1|A|A|1216
6NQB|1|A|C|1217
6NQB|1|A|C|1218

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19