IL_6NSH_020

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGCCAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_020 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.1508

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6NSH|1|QA|C|504
6NSH|1|QA|G|505
6NSH|1|QA|G|506
6NSH|1|QA|C|507
6NSH|1|QA|C|508
6NSH|1|QA|A|509
6NSH|1|QA|A|510
6NSH|1|QA|C|511
*
6NSH|1|QA|G|540
6NSH|1|QA|G|541

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QD

30S ribosomal protein S4

Chain QE

30S ribosomal protein S5

Chain QL

30S ribosomal protein S12