IL_6NSH_029

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6NSH|1|QA|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.093

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6NSH|1|QA|G|662
6NSH|1|QA|A|663
6NSH|1|QA|G|664
6NSH|1|QA|A|665
6NSH|1|QA|G|666
*
6NSH|1|QA|U|740
6NSH|1|QA|G|741
6NSH|1|QA|G|742
6NSH|1|QA|U|743

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QF

30S ribosomal protein S6

Chain QO

30S ribosomal protein S15

Chain QR

30S ribosomal protein S18