IL_6NSH_079

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_079 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.071

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

6NSH|1|RA|U|703
6NSH|1|RA|G|704
6NSH|1|RA|A|705
6NSH|1|RA|A|706
6NSH|1|RA|G|707
*
6NSH|1|RA|U|724
6NSH|1|RA|G|725
6NSH|1|RA|G|726
6NSH|1|RA|A|727
6NSH|1|RA|G|728

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RD

50S ribosomal protein L2