3D structure

PDB id
6NSH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6NSH|1|RA|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NSH_157 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.0705
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6NSH|1|RA|U|2636
6NSH|1|RA|U|2637
6NSH|1|RA|G|2638
6NSH|1|RA|A|2639
6NSH|1|RA|G|2640
*
6NSH|1|RA|C|2774
6NSH|1|RA|A|2775
6NSH|1|RA|A|2776
6NSH|1|RA|G|2777
6NSH|1|RA|A|2778
6NSH|1|RA|U|2779
6NSH|1|RA|G|2780
6NSH|1|RA|A|2781
6NSH|1|RA|G|2782

Current chains

Chain RA
23S rRNA

Nearby chains

Chain RE
50S ribosomal protein L3
Chain RN
50S ribosomal protein L13

Coloring options:


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