IL_6NSH_179

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GACAAC*GCUAAUC

Length

13 nucleotides

Bulged bases

6NSH|1|XA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_179 not in the Motif Atlas

Homologous match to IL_4LFB_009

Geometric discrepancy: 0.1399

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6NSH|1|XA|G|148
6NSH|1|XA|A|149
6NSH|1|XA|C|150
6NSH|1|XA|A|151
6NSH|1|XA|A|152
6NSH|1|XA|C|153
*
6NSH|1|XA|G|168
6NSH|1|XA|C|169
6NSH|1|XA|U|170
6NSH|1|XA|A|171
6NSH|1|XA|A|172
6NSH|1|XA|U|173
6NSH|1|XA|C|174

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XT

30S ribosomal protein S20