3D structure

PDB id
6NSH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
6NSH|1|XA|U|244, 6NSH|1|XA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6NSH_182 not in the Motif Atlas
Homologous match to IL_6CZR_123
Geometric discrepancy: 0.1003
The information below is about IL_6CZR_123
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.2
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
6

Unit IDs

6NSH|1|XA|C|242
6NSH|1|XA|A|243
6NSH|1|XA|U|244
6NSH|1|XA|C|245
6NSH|1|XA|A|246
6NSH|1|XA|G|247
*
6NSH|1|XA|C|277
6NSH|1|XA|G|278
6NSH|1|XA|A|279
6NSH|1|XA|C|280
6NSH|1|XA|G|281
6NSH|1|XA|A|282
6NSH|1|XA|C|283
6NSH|1|XA|G|284

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XL
30S ribosomal protein S12
Chain XQ
30S ribosomal protein S17

Coloring options:


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