IL_6NSH_227

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_227 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2831

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6NSH|1|XA|C|1407
6NSH|1|XA|A|1408
6NSH|1|XA|C|1409
*
6NSH|1|XA|G|1491
6NSH|1|XA|A|1492
6NSH|1|XA|A|1493
6NSH|1|XA|G|1494

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XX

mRNA

Chain YA

Large subunit ribosomal RNA; LSU rRNA