IL_6NSH_263

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGG*CCUAC

Length

9 nucleotides

Bulged bases

6NSH|1|YA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_263 not in the Motif Atlas

Geometric match to IL_5J7L_033

Geometric discrepancy: 0.2778

The information below is about IL_5J7L_033

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6NSH|1|YA|G|880
6NSH|1|YA|G|881
6NSH|1|YA|G|882
6NSH|1|YA|G|883
*
6NSH|1|YA|C|893
6NSH|1|YA|C|894
6NSH|1|YA|U|895
6NSH|1|YA|A|896
6NSH|1|YA|C|897

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25