IL_6NSH_292

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

6NSH|1|YA|C|1544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_292 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.31

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6NSH|1|YA|G|1526
6NSH|1|YA|G|1527
6NSH|1|YA|A|1528
6NSH|1|YA|A|1529
6NSH|1|YA|G|1530
*
6NSH|1|YA|U|1541
6NSH|1|YA|G|1542
6NSH|1|YA|A|1543
6NSH|1|YA|C|1544
6NSH|1|YA|A|1545
6NSH|1|YA|A|1545|||A
6NSH|1|YA|C|1546

Current chains

Chain YA

23S rRNA

Nearby chains