IL_6NSH_353

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_353 not in the Motif Atlas

Homologous match to IL_9DFE_029

Geometric discrepancy: 0.1051

The information below is about IL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.4

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

21

Unit IDs

6NSH|1|YA|A|870
6NSH|1|YA|U|871
6NSH|1|YA|A|872
*
6NSH|1|YA|U|905
6NSH|1|YA|G|906
6NSH|1|YA|U|907

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25