IL_6NSH_354

3D structure

PDB id

6NSH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

6NSH|1|YA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NSH_354 not in the Motif Atlas

Homologous match to IL_5J7L_284

Geometric discrepancy: 0.3123

The information below is about IL_5J7L_284

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.2

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

6NSH|1|YA|C|1043
6NSH|1|YA|G|1044
6NSH|1|YA|A|1045
6NSH|1|YA|A|1046
6NSH|1|YA|G|1047
6NSH|1|YA|A|1048
6NSH|1|YA|C|1049
6NSH|1|YA|A|1050
6NSH|1|YA|G|1051
*
6NSH|1|YA|U|1108
6NSH|1|YA|C|1109
6NSH|1|YA|G|1110
6NSH|1|YA|A|1111
6NSH|1|YA|G|1112

Current chains

Chain YA

23S rRNA

Nearby chains

Chain YH

50S ribosomal protein L6