IL_6NTA_019

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_019 not in the Motif Atlas

Homologous match to IL_4LFB_019

Geometric discrepancy: 0.1646

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6NTA|1|QA|G|450
6NTA|1|QA|A|451
6NTA|1|QA|A|452
6NTA|1|QA|A|453
6NTA|1|QA|C|454
6NTA|1|QA|C|455
*
6NTA|1|QA|G|477
6NTA|1|QA|A|478
6NTA|1|QA|C|479
6NTA|1|QA|U|480
6NTA|1|QA|G|481
6NTA|1|QA|A|482
6NTA|1|QA|C|483

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QP

30S ribosomal protein S16