IL_6NTA_103

3D structure

PDB id

6NTA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified ASL proline bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6NTA|1|RA|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NTA_103 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1363

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

6NTA|1|RA|C|1208
6NTA|1|RA|G|1209
6NTA|1|RA|A|1210
6NTA|1|RA|U|1211
6NTA|1|RA|G|1212
6NTA|1|RA|A|1213
6NTA|1|RA|A|1214
6NTA|1|RA|G|1215
*
6NTA|1|RA|U|1234
6NTA|1|RA|G|1235
6NTA|1|RA|G|1236
6NTA|1|RA|A|1237
6NTA|1|RA|G|1238

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RU

50S ribosomal protein L20