3D structure

PDB id
6NU2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structural insights into unique features of the human mitochondrial ribosome recycling
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
CCAAACCCACUCCACCUUACUACCAGCAACCUUAGCCAAACCAUUUACAUA*UUGUG
Length
56 nucleotides
Bulged bases
6NU2|1|A|C|1689, 6NU2|1|A|C|1693, 6NU2|1|A|C|1699, 6NU2|1|A|C|1707, 6NU2|1|A|A|1708, 6NU2|1|A|G|1709, 6NU2|1|A|C|1711, 6NU2|1|A|A|1712, 6NU2|1|A|A|1713, 6NU2|1|A|C|1714, 6NU2|1|A|C|1715, 6NU2|1|A|U|1716, 6NU2|1|A|A|1724, 6NU2|1|A|A|1727, 6NU2|1|A|A|1731, 6NU2|1|A|C|1732, 6NU2|1|A|A|1737, 6NU2|1|A|U|1766
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6NU2|1|A|C|1684
6NU2|1|A|C|1685
6NU2|1|A|A|1686
6NU2|1|A|A|1687
6NU2|1|A|A|1688
6NU2|1|A|C|1689
6NU2|1|A|C|1690
6NU2|1|A|C|1691
6NU2|1|A|A|1692
6NU2|1|A|C|1693
6NU2|1|A|U|1694
6NU2|1|A|C|1695
6NU2|1|A|C|1696
6NU2|1|A|A|1697
6NU2|1|A|C|1698
6NU2|1|A|C|1699
6NU2|1|A|U|1700
6NU2|1|A|U|1701
6NU2|1|A|A|1702
6NU2|1|A|C|1703
6NU2|1|A|U|1704
6NU2|1|A|A|1705
6NU2|1|A|C|1706
6NU2|1|A|C|1707
6NU2|1|A|A|1708
6NU2|1|A|G|1709
6NU2|1|A|C|1711
6NU2|1|A|A|1712
6NU2|1|A|A|1713
6NU2|1|A|C|1714
6NU2|1|A|C|1715
6NU2|1|A|U|1716
6NU2|1|A|U|1717
6NU2|1|A|A|1718
6NU2|1|A|G|1719
6NU2|1|A|C|1720
6NU2|1|A|C|1721
6NU2|1|A|A|1722
6NU2|1|A|A|1723
6NU2|1|A|A|1724
6NU2|1|A|C|1725
6NU2|1|A|C|1726
6NU2|1|A|A|1727
6NU2|1|A|U|1728
6NU2|1|A|U|1729
6NU2|1|A|U|1730
6NU2|1|A|A|1731
6NU2|1|A|C|1732
6NU2|1|A|A|1737
6NU2|1|A|U|1738
6NU2|1|A|A|1739
*
6NU2|1|A|U|1758
6NU2|1|A|U|1759
6NU2|1|A|G|1760
6NU2|1|A|U|1766
6NU2|1|A|G|1767

Current chains

Chain A
16S rRNA

Nearby chains

Chain 2
39S ribosomal protein L34, mitochondrial
Chain 3
39S ribosomal protein L35, mitochondrial
Chain 5
39S ribosomal protein L37, mitochondrial
Chain 9
39S ribosomal protein L41, mitochondrial
Chain F
39S ribosomal protein L4, mitochondrial
Chain H
39S ribosomal protein L9, mitochondrial
Chain M
39S ribosomal protein L15, mitochondrial
Chain U
39S ribosomal protein L23, mitochondrial
Chain V
39S ribosomal protein L24, mitochondrial
Chain X
39S ribosomal protein L28, mitochondrial
Chain Y
39S ribosomal protein L47, mitochondrial
Chain i
39S ribosomal protein L51, mitochondrial
Chain q
Growth arrest and DNA damage-inducible proteins-interacting protein 1

Coloring options:

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