RNA 3D Hub //

6NU2 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6NU2_0011/A/1722:1729No text annotation
geometric
HL_7RQB_006
NA
HL_6NU2_0021/A/1746:1752No text annotation
geometric
HL_4V9F_008
HL_76371.1
HL_6NU2_0051/A/1847:1856T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_6NU2_0631/A/1880:1894No text annotation
HL_6NU2_0061/A/1884:1890No text annotation
HL_6NU2_0081/A/1954:1963No text annotation
homologous
HL_8VTW_022
NA
HL_6NU2_0091/A/1988:1996No text annotation
geometric
HL_5TBW_021
NA
HL_6NU2_0111/A/2064:2075No text annotation
HL_6NU2_0161/A/2279:2286No text annotation
geometric
HL_2Y8W_001
NA
HL_6NU2_0171/A/2319:2324No text annotation
geometric
HL_5U3G_001
NA
HL_6NU2_0201/A/2428:2435No text annotation
homologous
HL_7A0S_040
HL_28592.1
HL_6NU2_0211/A/2497:2507No text annotation
homologous
HL_4WF9_043
HL_87681.1
HL_6NU2_0221/A/2518:2532No text annotation
HL_6NU2_0231/A/2555:2560No text annotation
geometric
HL_2Y8W_001
NA
HL_6NU2_0251/A/2612:2620No text annotation
homologous
HL_7A0S_048
HL_61418.1
HL_6NU2_0261/A/2690:2699No text annotation
homologous
HL_4WF9_047
HL_78372.1
HL_6NU2_0281/A/2812:2820No text annotation
homologous
HL_7A0S_052
HL_11974.1
HL_6NU2_0291/A/2828:2840No text annotation
HL_6NU2_0351/A/3081:3086GNRA
homologous
HL_7A0S_062
HL_34789.1
HL_6NU2_0371/A/3154:3159No text annotation
geometric
HL_4WRT_001
HL_19413.1
HL_6NU2_0391/A/3216:3224No text annotation
geometric
HL_7RQB_068
NA
HL_6NU2_0441/AA/804:809Mini UNCG
geometric
HL_8X5V_003
NA
HL_6NU2_0511/AA/1150:1155No text annotation
geometric
HL_4V9F_003
HL_75660.6
HL_6NU2_0531/AA/1281:1287No text annotation
geometric
HL_5TBW_006
NA

Problematic loops

#loop idProblemSequence
HL_6NU2_003GNRA
HL_6NU2_004No text annotation
HL_6NU2_007No text annotation
HL_6NU2_010No text annotation
HL_6NU2_012GNRA
HL_6NU2_013No text annotation
HL_6NU2_014No text annotation
HL_6NU2_064No text annotation
HL_6NU2_015GNRA wlth tandem sheared
HL_6NU2_018No text annotation
HL_6NU2_019Mini UNCG
HL_6NU2_024No text annotation
HL_6NU2_027No text annotation
HL_6NU2_030No text annotation
HL_6NU2_031Mini UNCG
HL_6NU2_032No text annotation
HL_6NU2_033GNRA variation
HL_6NU2_034No text annotation
HL_6NU2_036GNRA
HL_6NU2_038No text annotation
HL_6NU2_040No text annotation
HL_6NU2_065No text annotation
HL_6NU2_041No text annotation
HL_6NU2_042GNRA
HL_6NU2_043No text annotation
HL_6NU2_045No text annotation
HL_6NU2_046GNRA variation
HL_6NU2_047No text annotation
HL_6NU2_048No text annotation
HL_6NU2_049No text annotation
HL_6NU2_050Externally structured
HL_6NU2_052No text annotation
HL_6NU2_054Externally structured
HL_6NU2_055No text annotation
HL_6NU2_056No text annotation
HL_6NU2_057No text annotation
HL_6NU2_058No text annotation
HL_6NU2_059No text annotation
HL_6NU2_060No text annotation
HL_6NU2_061tRNA anticodon loop
HL_6NU2_062No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6NU2_0021/A/1682:1683,
1/A/1768:1770		Single bulged A
homologous
IL_7A0S_002
IL_14190.1
IL_6NU2_0971/A/1684:1739,
1/A/1758:1767		No text annotation
IL_6NU2_0031/A/1739:1745,
1/A/1753:1758		Sarcin-Ricin target in LSU H95; G-bulge
geometric
IL_4V9F_092
IL_02666.1
IL_6NU2_0041/A/1877:1879,
1/A/1895:1897		Isolated non-canonical cWW pair
geometric
IL_3GM7_002
IL_01003.1
IL_6NU2_0061/A/1904:1906,
1/A/2016:2018		Isolated non-canonical cWW pair
homologous
IL_7A0S_014
IL_01003.1
IL_6NU2_0071/A/1906:1910,
1/A/2009:2016		tHW-tHW cross-strand stack
geometric
IL_4V9F_024
IL_73855.1
IL_6NU2_0091/A/1925:1927,
1/A/1977:1979		Isolated non-canonical cWW pair
geometric
IL_7A0S_014
IL_01003.1
IL_6NU2_0121/A/1985:1987,
1/A/1997:2001		Multiple bulged bases
geometric
IL_5J7L_265
NA
IL_6NU2_0131/A/2046:2048,
1/A/2091:2094		No text annotation
geometric
IL_6ZDU_001
NA
IL_6NU2_0141/A/2057:2063,
1/A/2076:2082		No text annotation
IL_6NU2_0151/A/2145:2147,
1/A/2254:2255		Single bulged C
homologous
IL_5J7L_276
NA
IL_6NU2_0161/A/2149:2153,
1/A/2248:2252		UAA/GAN
homologous
IL_7A0S_033
IL_08938.1
IL_6NU2_0211/A/2306:2313,
1/A/2674:2680		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_6NU2_0221/A/2329:2333,
1/A/2441:2448		No text annotation
IL_6NU2_1011/A/2384:2400,
1/A/2403:2408		No text annotation
IL_6NU2_0271/A/2478:2487,
1/A/2648:2653		No text annotation
IL_6NU2_0281/A/2490:2491,
1/A/2643:2645		Single bulged A
homologous
IL_5J7L_312
NA
IL_6NU2_0301/A/2552:2553,
1/A/2562:2565		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_6NU2_0311/A/2596:2597,
1/A/2627:2630		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_6NU2_0341/A/2717:2719,
1/A/3099:3102		No text annotation
homologous
IL_4WF9_079
IL_80025.1
IL_6NU2_0351/A/2730:2732,
1/A/2929:2930		Single bulged U
homologous
IL_4WF9_080
IL_97561.1
IL_6NU2_0361/A/2733:2734,
1/A/2925:2928		Minor groove platform
homologous
IL_4WF9_081
IL_34520.1
IL_6NU2_0371/A/2744:2746,
1/A/2802:2803		Minor groove platform
geometric
IL_7A0S_003
IL_34520.1
IL_6NU2_0381/A/2849:2855,
1/A/2877:2889		No text annotation
IL_6NU2_0391/A/2856:2860,
1/A/2872:2876		Double sheared with non-canonical cWW
geometric
IL_5J7L_274
NA
IL_6NU2_0401/A/2940:2941,
1/A/2985:2987		Single stack bend
homologous
IL_7A0S_083
IL_15011.1
IL_6NU2_0411/A/2941:2942,
1/A/2983:2985		Major groove intercalation
geometric
IL_4V9F_101
IL_14190.1
IL_6NU2_0451/A/2997:2999,
1/A/3061:3065		Isolated non-canonical cWW with bulges
geometric
IL_4WF9_095
IL_68118.1
IL_6NU2_0461/A/2999:3000,
1/A/3058:3061		No text annotation
homologous
IL_4WF9_096
IL_44609.1
IL_6NU2_0471/A/3008:3010,
1/A/3027:3031		No text annotation
IL_6NU2_0491/A/3115:3117,
1/A/3139:3141		Isolated non-canonical cWW pair
geometric
IL_4LFB_061
NA
IL_6NU2_0581/AA/762:765,
1/AA/777:778		Major groove platform; stack outside cWW
geometric
IL_6CZR_139
NA
IL_6NU2_1051/AA/762:766,
1/AA/775:778		No text annotation
IL_6NU2_1091/AA/1140:1148,
1/AA/1157:1164		9x7 Sarcin-Ricin with inserted C; G-bulge
homologous
IL_6CZR_146
NA
IL_6NU2_0871/AA/1485:1488,
1/AA/1562:1566		No text annotation
geometric
IL_4V88_464
NA
IL_6NU2_1151/AA/1500:1503,
1/AA/1547:1549		No text annotation

Problematic loops

#loop idProblemSequence
IL_6NU2_001No text annotation
IL_6NU2_005No text annotation
IL_6NU2_008Isolated non-canonical cWW pair
IL_6NU2_010Single bulged A
IL_6NU2_112No text annotation
IL_6NU2_011No text annotation
IL_6NU2_098No text annotation
IL_6NU2_099No text annotation
IL_6NU2_017Isolated near basepair
IL_6NU2_018No text annotation
IL_6NU2_019No text annotation
IL_6NU2_020Single stack bend
IL_6NU2_100No text annotation
IL_6NU2_023No text annotation
IL_6NU2_102No text annotation
IL_6NU2_024Isolated tWW turn
IL_6NU2_025Major groove platform; stack outside cWW
IL_6NU2_103No text annotation
IL_6NU2_026Intercalated tWH
IL_6NU2_029No text annotation
IL_6NU2_032No text annotation
IL_6NU2_033Major groove platform with extra pair
IL_6NU2_042Major groove platform with extra pair
IL_6NU2_113No text annotation
IL_6NU2_043No text annotation
IL_6NU2_044Double sheared with non-canonical cWW
IL_6NU2_048Single bulged A
IL_6NU2_050No text annotation
IL_6NU2_051C-loop
IL_6NU2_052No text annotation
IL_6NU2_053Single bulged A
IL_6NU2_054Minor groove platform
IL_6NU2_055Minor groove platform with extra cWW
IL_6NU2_104No text annotation
IL_6NU2_056No text annotation
IL_6NU2_057Kink-turn with non-sequential stacking
IL_6NU2_059No text annotation
IL_6NU2_060Single bulged U
IL_6NU2_061C-loop
IL_6NU2_062Single bulged A
IL_6NU2_063Tandem non-canonical cWW pairs
IL_6NU2_064Kink-turn related
IL_6NU2_065Major groove intercalation
IL_6NU2_066No text annotation
IL_6NU2_106No text annotation
IL_6NU2_067Isolated non-canonical cWW pair
IL_6NU2_068No text annotation
IL_6NU2_069No text annotation
IL_6NU2_107No text annotation
IL_6NU2_070No text annotation
IL_6NU2_071tSH-tHW-tHS
IL_6NU2_072Isolated non-canonical cWW pair
IL_6NU2_108Single stack bend
IL_6NU2_073No text annotation
IL_6NU2_110Single bulged A
IL_6NU2_074Isolated non-canonical cWW with bulges
IL_6NU2_075Isolated non-canonical cWW pair
IL_6NU2_076C-loop
IL_6NU2_077No text annotation
IL_6NU2_114No text annotation
IL_6NU2_078No text annotation
IL_6NU2_079Single bulged C
IL_6NU2_080No text annotation
IL_6NU2_111No text annotation
IL_6NU2_081Minor groove platform
IL_6NU2_082Single bulged A
IL_6NU2_083Isolated non-canonical cWW pair
IL_6NU2_084Double sheared
IL_6NU2_085No text annotation
IL_6NU2_086No text annotation
IL_6NU2_088No text annotation
IL_6NU2_089No text annotation
IL_6NU2_090No text annotation
IL_6NU2_091Tandem non-canonical cWW pairs
IL_6NU2_092Single bulged C
IL_6NU2_093No text annotation
IL_6NU2_094No text annotation
IL_6NU2_095Isolated non-canonical cWW pair
IL_6NU2_096No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6NU2_0121/A/1672:1681,
1/A/1771:1785,
1/A/1792:1816		No text annotation
J3_6NU2_0011/A/1915:1921,
1/A/1983:1985,
1/A/2001:2004		No text annotation
homologous
J3_4WF9_002
J3_46658.1
J3_6NU2_0131/A/2153:2168,
1/A/2192:2197,
1/A/2212:2248		No text annotation
J3_6NU2_0031/A/2336:2343,
1/A/2423:2427,
1/A/2436:2438		No text annotation
J3_6NU2_0041/A/2343:2345,
1/A/2368:2375,
1/A/2421:2423		No text annotation
J3_6NU2_0141/A/2846:2848,
1/A/2890:2900,
1/A/2909:2915		No text annotation
J3_6NU2_0051/A/3004:3007,
1/A/3032:3034,
1/A/3048:3054		No text annotation
homologous
J3_4WF9_009
J3_32601.6
J3_6NU2_0081/AA/1192:1194,
1/AA/1428:1434,
1/AA/1456:1462		No text annotation
J4_6NU2_0101/A/1827:1829,
1/A/1841:1860,
1/A/2305:2306,
1/A/2680:2681		No text annotation
J4_6NU2_0021/A/2314:2317,
1/A/2326:2327,
1/A/2450:2453,
1/A/2671:2673		No text annotation
J4_6NU2_0031/A/2336:2345,
1/A/2368:2375,
1/A/2421:2427,
1/A/2436:2438		No text annotation
J4_6NU2_0041/A/2492:2496,
1/A/2508:2513,
1/A/2537:2542,
1/A/2637:2642		No text annotation
J4_6NU2_0051/A/2544:2546,
1/A/2569:2570,
1/A/2587:2596,
1/A/2630:2635		No text annotation
homologous
J4_5J7L_026
NA
J4_6NU2_0081/AA/941:943,
1/AA/1052:1057,
1/AA/1098:1109,
1/AA/1132:1133		No text annotation
homologous
J4_5J7L_003
NA
J5_6NU2_0011/A/1865:1875,
1/A/1899:1903,
1/A/2019:2022,
1/A/2271:2276,
1/A/2289:2300		No text annotation
J5_6NU2_0021/A/2720:2727,
1/A/2933:2940,
1/A/2987:2995,
1/A/3067:3075,
1/A/3093:3098		No text annotation
J5_6NU2_0031/A/2737:2740,
1/A/2807:2810,
1/A/2822:2823,
1/A/2845:2846,
1/A/2915:2922		No text annotation
homologous
J5_7A0S_007
J5_39529.2
J6_6NU2_0021/A/2027:2032,
1/A/2043:2045,
1/A/2095:2098,
1/A/2123:2127,
1/A/2138:2143,
1/A/2257:2266		No text annotation

Problematic loops

#loop idProblemSequence
J3_6NU2_002No text annotation
J3_6NU2_017No text annotation
J3_6NU2_006No text annotation
J3_6NU2_007No text annotation
J3_6NU2_015No text annotation
J3_6NU2_009No text annotation
J3_6NU2_018No text annotation
J3_6NU2_010No text annotation
J3_6NU2_011No text annotation
J3_6NU2_016No text annotation
J4_6NU2_001No text annotation
J4_6NU2_006No text annotation
J4_6NU2_007No text annotation
J4_6NU2_009No text annotation
J6_6NU2_001No text annotation

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