IL_6NUO_088

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_088 not in the Motif Atlas

Homologous match to IL_7RQB_029

Geometric discrepancy: 0.1144

The information below is about IL_7RQB_029

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_02509.1

Basepair signature

cWW-tSW-cWS-cSH-tWH-R-R-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|RA|G|911
6NUO|1|RA|C|912
6NUO|1|RA|A|913
6NUO|1|RA|C|914
6NUO|1|RA|U|915
*
6NUO|1|RA|A|955
6NUO|1|RA|A|956
6NUO|1|RA|A|957
6NUO|1|RA|C|958

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RB

5S ribosomal RNA; 5S rRNA

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25