IL_6NUO_125

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUCUG*CUGU

Length

10 nucleotides

Bulged bases

6NUO|1|RA|G|2014

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_125 not in the Motif Atlas

Geometric match to IL_7A0S_062

Geometric discrepancy: 0.1038

The information below is about IL_7A0S_062

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6NUO|1|RA|A|1716
6NUO|1|RA|C|1717
6NUO|1|RA|U|1718
6NUO|1|RA|C|1719
6NUO|1|RA|U|1720
6NUO|1|RA|G|1721
*
6NUO|1|RA|C|2012
6NUO|1|RA|U|2013
6NUO|1|RA|G|2014
6NUO|1|RA|U|2015

Current chains

Chain RA

23S rRNA

Nearby chains

Chain RE

50S ribosomal protein L3

Chain RO

50S ribosomal protein L14