IL_6NUO_126

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6NUO|1|RA|G|1746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_126 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1222

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6NUO|1|RA|C|1733
6NUO|1|RA|G|1734
6NUO|1|RA|U|1735
6NUO|1|RA|A|1736
6NUO|1|RA|A|1737
6NUO|1|RA|C|1738
*
6NUO|1|RA|G|1743
6NUO|1|RA|G|1744
6NUO|1|RA|A|1745
6NUO|1|RA|G|1746
6NUO|1|RA|A|1747
6NUO|1|RA|A|1748
6NUO|1|RA|G|1749

Current chains

Chain RA

23S rRNA

Nearby chains

Chain QA

Small subunit ribosomal RNA; SSU rRNA

Chain RD

50S ribosomal protein L2