IL_6NUO_156

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_156 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.1879

The information below is about IL_5J7L_338

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6NUO|1|RA|C|2478
6NUO|1|RA|C|2479
6NUO|1|RA|G|2480
6NUO|1|RA|A|2481
6NUO|1|RA|G|2482
*
6NUO|1|RA|C|2492
6NUO|1|RA|G|2493
6NUO|1|RA|G|2494
6NUO|1|RA|C|2495
6NUO|1|RA|G|2496

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RQ

50S ribosomal protein L16

Chain RZ

50S ribosomal protein L25