IL_6NUO_208

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_208 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.1026

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6NUO|1|XA|C|779
6NUO|1|XA|A|780
6NUO|1|XA|A|781
6NUO|1|XA|A|782
6NUO|1|XA|C|783
*
6NUO|1|XA|G|799
6NUO|1|XA|G|800
6NUO|1|XA|U|801
6NUO|1|XA|A|802
6NUO|1|XA|G|803

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XK

30S ribosomal protein S11

Chain YA

Large subunit ribosomal RNA; LSU rRNA