IL_6NUO_222

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CCAGC*GG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_222 not in the Motif Atlas

Geometric match to IL_5J7L_007

Geometric discrepancy: 0.3448

The information below is about IL_5J7L_007

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_15052.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

8

Unit IDs

6NUO|1|XA|C|1128
6NUO|1|XA|C|1129
6NUO|1|XA|A|1130
6NUO|1|XA|G|1131
6NUO|1|XA|C|1132
*
6NUO|1|XA|G|1142
6NUO|1|XA|G|1143

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XI

30S ribosomal protein S9