IL_6NUO_243

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGAGUAG*CGAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_243 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.0639

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6NUO|1|YA|U|228
6NUO|1|YA|G|229
6NUO|1|YA|A|230
6NUO|1|YA|G|231
6NUO|1|YA|U|232
6NUO|1|YA|A|233
6NUO|1|YA|G|234
*
6NUO|1|YA|C|242
6NUO|1|YA|G|243
6NUO|1|YA|A|244
6NUO|1|YA|A|245
6NUO|1|YA|A|246
6NUO|1|YA|G|247

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y8

50S ribosomal protein L35

Chain YP

50S ribosomal protein L15