IL_6NUO_305

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UGCGAAC*GGAGGUAUA

Length

16 nucleotides

Bulged bases

6NUO|1|YA|G|1832, 6NUO|1|YA|G|1847, 6NUO|1|YA|U|1851

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_305 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.0783

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|YA|U|1829
6NUO|1|YA|G|1830
6NUO|1|YA|C|1831
6NUO|1|YA|G|1832
6NUO|1|YA|A|1833
6NUO|1|YA|A|1834
6NUO|1|YA|C|1835
*
6NUO|1|YA|G|1844
6NUO|1|YA|G|1845
6NUO|1|YA|A|1846
6NUO|1|YA|G|1847
6NUO|1|YA|G|1848
6NUO|1|YA|U|1849
6NUO|1|YA|A|1850
6NUO|1|YA|U|1851
6NUO|1|YA|A|1852

Current chains

Chain YA

23S rRNA

Nearby chains

Chain XA

Small subunit ribosomal RNA; SSU rRNA

Chain YD

50S ribosomal protein L2