IL_6NUO_343

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

6NUO|1|YA|A|2778

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_343 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0699

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|YA|G|2750
6NUO|1|YA|A|2751
6NUO|1|YA|U|2752
6NUO|1|YA|A|2753
6NUO|1|YA|A|2754
6NUO|1|YA|C|2755
*
6NUO|1|YA|G|2775
6NUO|1|YA|G|2776
6NUO|1|YA|A|2777
6NUO|1|YA|A|2778
6NUO|1|YA|G|2779
6NUO|1|YA|C|2780

Current chains

Chain YA

23S rRNA

Nearby chains

Chain Y9

50S ribosomal protein L36

Chain YH

50S ribosomal protein L6

Chain YN

50S ribosomal protein L13