IL_6NUO_347

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGUGCC*GUGCGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_347 not in the Motif Atlas

Geometric match to IL_6O5F_001

Geometric discrepancy: 0.3672

The information below is about IL_6O5F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

6NUO|1|YB|C|6
6NUO|1|YB|G|7
6NUO|1|YB|U|8
6NUO|1|YB|G|9
6NUO|1|YB|C|10
6NUO|1|YB|C|11
*
6NUO|1|YB|G|110
6NUO|1|YB|U|111
6NUO|1|YB|G|112
6NUO|1|YB|C|113
6NUO|1|YB|G|114
6NUO|1|YB|G|115

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y0

50S ribosomal protein L27

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YS

50S ribosomal protein L18