IL_6NUO_355

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GCGG*CGCC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_355 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3037

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

6NUO|1|YB|G|83
6NUO|1|YB|C|84
6NUO|1|YB|G|85
6NUO|1|YB|G|86
*
6NUO|1|YB|C|91
6NUO|1|YB|G|92
6NUO|1|YB|C|93
6NUO|1|YB|C|94

Current chains

Chain YB

5S rRNA

Nearby chains

Chain Y3

50S ribosomal protein L30

Chain YA

Large subunit ribosomal RNA; LSU rRNA

Chain YQ

50S ribosomal protein L16

Chain YZ

50S ribosomal protein L25