IL_6NUO_370

3D structure

PDB id

6NUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

6NUO|1|XA|A|412

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NUO_370 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1248

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

6NUO|1|XA|G|409
6NUO|1|XA|G|410
6NUO|1|XA|A|411
6NUO|1|XA|A|412
6NUO|1|XA|G|413
6NUO|1|XA|A|414
6NUO|1|XA|A|415
6NUO|1|XA|G|416
*
6NUO|1|XA|U|427
6NUO|1|XA|G|428
6NUO|1|XA|U|429
6NUO|1|XA|A|430
6NUO|1|XA|A|431
6NUO|1|XA|A|432
6NUO|1|XA|C|433

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XD

30S ribosomal protein S4