IL_6NWY_034

3D structure

PDB id

6NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Modified tRNA(Pro) bound to Thermus thermophilus 70S (near-cognate)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6NWY_034 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1203

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6NWY|1|QA|C|779
6NWY|1|QA|A|780
6NWY|1|QA|A|781
6NWY|1|QA|A|782
6NWY|1|QA|C|783
*
6NWY|1|QA|G|799
6NWY|1|QA|G|800
6NWY|1|QA|U|801
6NWY|1|QA|A|802
6NWY|1|QA|G|803

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QK

30S ribosomal protein S11

Chain RA

Large subunit ribosomal RNA; LSU rRNA